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Species belonging to selected taxon:

Ciona savignyi



ABOUT THIS RECORD

ID: MNEST025315
species: Ciona savignyi
miRNA family: let-7
source: miRBase, original name: csa-let-7c-1 (MI0007183)

Taxonomy by NCBI:
Ciona savignyi Ciona Cionidae Phlebobranchia Enterogona Ascidiacea Tunicata Chordata Deuterostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTAGGTTATGCAGTT

miRNA*
CTGTGTAACCTTCTGCCTTTGT

mismatches: 3
bulges: 0

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pre-miRNA
GGGCTTCTCCCACAATGAGGTAGTAGGTTATGCAGTTTTTGCCTTGAATGTTTTTAGAGGCACAGGAGCTACTGTGTAACCTTCTGCCTTTGTGGCAGAT
G


dot-bracket secondary structure
.....(((.(((((..(((((((.((((((((((((....((((((..(((((....))))))))).)).)))))))))))).)))))))))))).))).
.



SIMILARITIES
miRBase cin-let-7a-1: 0.000000000005

PMRD no hits

microPC no hits
UniProt no hits

RFAM let-7: 2e-42

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Fu X, Adamski M, Thompson EM, Mol Biol Evol. 25:1067-1080(2008)., "Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"




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